Stem-loop mtr-MIR5284d

Accession

MI0018441

Description

Medicago truncatula mtr-MIR5284d precursor miRNA

Sequence

32045 reads, 278.0 reads per million, 111 experiments

ccauguaauuucauauuccuccacuuuuggucccucauuuuacgugccauguAUGCAGAUUCUGCUGACGUGGUGGaauGAGGGACCAAAAGUGGAAGAAUCUgacauuacaggg
((.((((((.(((.((((.((((((((((((((((((((((....(((((((..((((...))))..))))))))))))))))))))))))))))).)))).))).)))))))).

Structure

-  a      u   u    c                      acgu       AU    A 
 cc uguaau uca auuc uccacuuuuggucccucauuuu    gccaugu  GCAG  
 || |||||| ||| |||| ||||||||||||||||||||||    |||||||  |||| U
 gg acauua agU UAAG AGGUGAAAACCAGGGAGuaaGG    UGGUGCA  CGUC  
g  -      c   C    A                      ----       GU    U 

Annotation confidence Low

Genome context

chr4: 6702508-6702622 [+]

Mature mtr-miR5284d-5p

• Accession: MIMAT0055202
• Description: Medicago truncatula mtr-miR5284d-5p mature miRNA
• Sequence: 53 - AUGCAGAUUCUGCUGACGUGGUGG - 76
• Evidence: experimental ; unknown

Mature mtr-miR5284d-3p

• Accession: MIMAT0021338
• Description: Medicago truncatula mtr-miR5284d-3p mature miRNA
• Sequence: 80 - GAGGGACCAAAAGUGGAAGAAUCU - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010