miRBase entry: mtr-MIR5284c

Stem-loop mtr-MIR5284c


Accession
MI0018440
Description
Medicago truncatula mtr-MIR5284c precursor miRNA


Sequence

25770 reads, 217.0 reads per million, 111 experiments
cUUUUGGUCCCUGUAAUUUCAGAUUccuccacuuuuagucccucauuuuacaugccauguauguagauucggcugaugugguggaauGAGGGACCAAAAGUGGAAGAAUCUgaaauuacagagacaaaauc
......(((.((((((((((((((((.(((((((((.((((((((((((....(((((((..((.......))..))))))))))))))))))).))))))))).)))))))))))))))).)))......

Structure
cUUUUG   C                c         a            acau       au  ag 
      GUC CUGUAAUUUCAGAUUc uccacuuuu gucccucauuuu    gccaugu  gu  a
      ||| |||||||||||||||| ||||||||| ||||||||||||    |||||||  ||  u
      cag gacauuaaagUCUAAG AGGUGAAAA CAGGGAGuaagg    uggugua  cg  u
cuaaaa   a                A         C            ----       gu  gc 


Annotation confidence Low
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Genome context
chr4: 29918300-29918430 [+]

Database links

Mature mtr-miR5284c-5p

Accession MIMAT0055201
Description Medicago truncatula mtr-miR5284c-5p mature miRNA
Sequence 2 - UUUUGGUCCCUGUAAUUUCAGAUU - 25
Evidence experimental
unknown

Mature mtr-miR5284c-3p

Accession MIMAT0021337
Description Medicago truncatula mtr-miR5284c-3p mature miRNA
Sequence 88 - GAGGGACCAAAAGUGGAAGAAUCU - 111
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010