Stem-loop mtr-MIR2590j

Accession

MI0018437

Description

Medicago truncatula mtr-MIR2590j precursor miRNA

Literature search

1 open access papers mention mtr-MIR2590j
(1 sentences)

Sequence

46947 reads, 432.0 reads per million, 111 experiments

aucaagaaaauuucaAGAAUGACAUGGCAGAAUAAUCACccuuagauuuuaucaagaaauaguccugaaauuaaugcuagccaauaaaaucucagucuggccggaaaucauggggugguggauguuauguauuuuuuuuuaugaaagauuaauAAAUGAGACUGAAAUCUAAAGGUgauuauugugccaugucauucuugaaucuuucuuaua
...((((((..((((((((((((((((((.((((((((((.(((((((((((((.....(((((..((((..(((((((((...((..((((((................))))))..))...)))).)))))..)))).......))))).....)))...)))))))))).)))))))))).))))))))))))))))))..))))))...

Structure

auc      au                  G          c          ---   agaaa     -----cu    uu     -    caa  aa      gucuggc 
   aagaaa  uucaAGAAUGACAUGGCA AAUAAUCACc uuagauuuua   uca     uaguc       gaaa  aaugc uagc   ua  aucuca       c
   ||||||  |||||||||||||||||| |||||||||| ||||||||||   |||     |||||       ||||  ||||| ||||   ||  ||||||        
   uucuuu  aaguucuuacuguaccgu uuauuagUGG AAUCUAAAGU   AGU     auuag       uuuu  uuaug auug   gu  uggggu       g
aua      cu                  g          A          CAG   AAAua     aaaguau    uu     u    uag  gg      acuaaag 

Annotation confidence Low

Genome context

chr7: 35647909-35648121 [+]

Mature mtr-miR2590j-5p

• Accession: MIMAT0021334
• Description: Medicago truncatula mtr-miR2590j-5p mature miRNA
• Sequence: 16 - AGAAUGACAUGGCAGAAUAAUCAC - 39
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2590j-3p

• Accession: MIMAT0055198
• Description: Medicago truncatula mtr-miR2590j-3p mature miRNA
• Sequence: 154 - AAAUGAGACUGAAAUCUAAAGGU - 176
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010