Dead hairpin entry

Stem-loop mtr-MIR2590i

Accession

MI0018436

Description

Medicago truncatula mtr-MIR2590i precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

1 open access papers mention mtr-MIR2590i
(1 sentences)

Sequence

37520 reads, 348.0 reads per million, 111 experiments

ucaagaaaauuucaAGAAUGACAUGGCAGAAUAAUCACccuuagauuuuaucaagaaauagucaugaaauuaauguuaaccaauaaaaucucagccuggccgaaaaucaugggaugguggguguuauguauuuuuuuuuuaugaaagauuaauAAAUGAGACUGAAAUCUAAAGGUgauuauuguaccaugucauucuuaaauuuuucuuau
..(((((((.((.(((((((((((((.(.((((((((((.(((((((((((((.((.....)).)))............(((.....((((((................))))))..)))((.((((.((((..(((((....)))))..)))).)))).)))))))))))).)))))))))).).))))))))))))).)).)))))))..

Structure

uc       u  c             C G          c          ucaagaaauagucaugaaauuaauguuaaccaauaaaaucucagccuggccgaaaaucaugggauggugg  g    g    uu     u 
  aagaaaa uu aAGAAUGACAUGG A AAUAAUCACc uuagauuuua                                                                      gu uuau uauu  uuuuu a
  ||||||| || ||||||||||||| | |||||||||| ||||||||||                                                                      || |||| ||||  |||||  
  uucuuuu aa uucuuacuguacc u uuauuagUGG AAUCUAAAGU                                                                      CA AGUA Auaa  agaaa u
ua       u  a             a g          A          ----------------------------------------------------------------------  G    A    uu     g