Stem-loop mtr-MIR5283

Accession

MI0018430

Description

Medicago truncatula mtr-MIR5283 precursor miRNA

Literature search

1 open access papers mention mtr-MIR5283
(1 sentences)

Sequence

6687 reads, 60.0 reads per million, 111 experiments

guaucCGUGCGUAUCGGGAUGUAUCGGAAaguaucagauuauuauuuuuuuuuaaaauaaaAUUUAAUAUUUGGAUACUCcccggauacauaucgggaaguau
......((((...((((.(((((((((..((((((.((.(((((..((((........))))..))))).)).))))))..)).))))))).))))...))))

Structure

guaucC    GUA    G       -  AA      a  u     uu    uuu 
      GUGC   UCGG AUGUAUC GG  aguauc ga uauua  uuuu   a
      ||||   |||| ||||||| ||  |||||| || |||||  ||||    
      uaug   ggcu uacauag cc  UCAUAG UU AUAAU  Aaaa   a
------    aag    a       g  cC      G  U     UU    uaa 

Annotation confidence Low

Genome context

chr5: 40353897-40353999 [+]

Mature mtr-miR5283-5p

• Accession: MIMAT0021327
• Description: Medicago truncatula mtr-miR5283-5p mature miRNA
• Sequence: 6 - CGUGCGUAUCGGGAUGUAUCGGAA - 29
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5283-3p

• Accession: MIMAT0055191
• Description: Medicago truncatula mtr-miR5283-3p mature miRNA
• Sequence: 62 - AUUUAAUAUUUGGAUACUC - 80
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010