miRBase entry: mtr-MIR5281c

Stem-loop mtr-MIR5281c


Accession
MI0018425
Description
Medicago truncatula mtr-MIR5281c precursor miRNA


Sequence

124271 reads, 849.0 reads per million, 111 experiments
ggauauauauuacuaccUCCGGUCCUAUUUAUAAGAGAAAUuuaggucaacaaaagugaauguauuuggacugaauuuuuaacuagauacaucaacuuuuguugacccaaaauucUCUUAUAAAUAGGACCGGAGGGAGuacuccaguuuau
(((.......((((.((((((((((((((((((((((((.(((.(((((((((((((..((((((((((.............))))))))))..))))))))))))).))).)))))))))))))))))))))))).)))).))).......

Structure
-------   uauauau    a                        A   a             ga          acuga 
       gga       uacu ccUCCGGUCCUAUUUAUAAGAGAA Uuu ggucaacaaaagu  auguauuugg     a
       |||       |||| |||||||||||||||||||||||| ||| |||||||||||||  ||||||||||     u
       ccu       auGA GGAGGCCAGGAUAAAUAUUCUcuu aaa ccaguuguuuuca  uacauagauc     u
uauuuga   ------c    G                        a   c             ac          aauuu 


Annotation confidence Low
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Genome context
chr8: 4438315-4438466 [+]

Database links

Mature mtr-miR5281c-5p

Accession MIMAT0055186
Description Medicago truncatula mtr-miR5281c-5p mature miRNA
Sequence 18 - UCCGGUCCUAUUUAUAAGAGAAAU - 41
Evidence experimental
unknown

Mature mtr-miR5281c-3p

Accession MIMAT0021322
Description Medicago truncatula mtr-miR5281c-3p mature miRNA
Sequence 116 - UCUUAUAAAUAGGACCGGAGGGAG - 139
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010