Stem-loop mtr-MIR5278

Accession

MI0018420

Description

Medicago truncatula mtr-MIR5278 precursor miRNA

Sequence

2403 reads, 26.0 reads per million, 111 experiments

cugcaggaaACACAUUUCCUGCAGAUUUUGCCAaggguuuagguuccacaggaaagauauauccguagaaaauauGAAAUUAUCUGCAGGAAAUGUGAAauuauccgca
.(((.(((..(((((((((((((((((((((...((((.((..((((...))))...)).)))))))))............))))))))))))))))......))))))

Structure

c   a   ----aA                ------------     CAa    u  -gg    a 
 ugc gga      CACAUUUCCUGCAGAU            UUUGC   gggu ua   uucc  
 ||| |||      ||||||||||||||||            |||||   |||| ||   |||| c
 acg ccu      GUGUAAAGGACGUCUA            agaug   ccua au   aagg  
-   -   auuaAA                UUAAAGuauaaa     ---    u  aga    a 

Annotation confidence Medium

Genome context

chr6: 22025281-22025389 [-]

Mature mtr-miR5278-5p

• Accession: MIMAT0055181
• Description: Medicago truncatula mtr-miR5278-5p mature miRNA
• Sequence: 10 - ACACAUUUCCUGCAGAUUUUGCCA - 33
• Evidence: experimental ; unknown

Mature mtr-miR5278-3p

• Accession: MIMAT0021317
• Description: Medicago truncatula mtr-miR5278-3p mature miRNA
• Sequence: 76 - GAAAUUAUCUGCAGGAAAUGUGAA - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010