miRBase entry: mtr-MIR5277

Stem-loop mtr-MIR5277


Accession
MI0018419
Description
Medicago truncatula mtr-MIR5277 precursor miRNA


Sequence

37350 reads, 363.0 reads per million, 111 experiments
ccuugcuuguCUUGGACUUCAAGAAACAACUuuguuugacuugcacuucaagguuguuucucgaagugcaagacaagcaAGGUUGUUUCUUGAAGUGCAAGGCaagcaagg
((((((((((((((.(((((((((((((((((((((((.((((((((((.(((.....))).)))))))))).))))))))))))))))))))))).))))))))))))))

Structure
              G                       a          a   u 
ccuugcuuguCUUG ACUUCAAGAAACAACUuuguuug cuugcacuuc agg u
|||||||||||||| ||||||||||||||||||||||| |||||||||| ||| g
ggaacgaaCGGAAC UGAAGUUCUUUGUUGGAacgaac gaacgugaag ucu u
              G                       a          c   u 


Annotation confidence High
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Genome context
chr5: 33968902-33969012 [-]

Database links

Mature mtr-miR5277-5p

Accession MIMAT0055180
Description Medicago truncatula mtr-miR5277-5p mature miRNA
Sequence 11 - CUUGGACUUCAAGAAACAACU - 31
Evidence experimental
unknown

Mature mtr-miR5277-3p

Accession MIMAT0021316
Description Medicago truncatula mtr-miR5277-3p mature miRNA
Sequence 80 - AGGUUGUUUCUUGAAGUGCAAGGC - 103
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010