miRBase entry: mtr-MIR5276

Stem-loop mtr-MIR5276


Accession
MI0018417
Description
Medicago truncatula mtr-MIR5276 precursor miRNA


Sequence

7472 reads, 115.0 reads per million, 111 experiments
aagcauauauAGGGGGAGCACCUUGCUGGGGCAUggcuggagcugguugggggucgcccagacacUCCCCAACAGGCUGCUCCCCCCaaaucugcccca
..(((......(((((((((.((((.(((((..((.((((.((............)))))).))..))))).)))).)))))))))......)))....

Structure
--aa   uauauA         C    C     CA  g    a  ugguu 
    gca      GGGGGAGCA CUUG UGGGG  Ug cugg gc     g
    |||      ||||||||| |||| |||||  || |||| ||      
    cgu      CCCCCUCGU GGAC ACCCC  ac gacc cg     g
accc   cuaaaC         C    A     Uc  a    -  cuggg 


Annotation confidence Medium
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Genome context
chr5: 21101295-21101393 [+]

Database links

Mature mtr-miR5276-5p

Accession MIMAT0021314
Description Medicago truncatula mtr-miR5276-5p mature miRNA
Sequence 11 - AGGGGGAGCACCUUGCUGGGGCAU - 34
Evidence experimental
Illumina [1]

Mature mtr-miR5276-3p

Accession MIMAT0055178
Description Medicago truncatula mtr-miR5276-3p mature miRNA
Sequence 66 - UCCCCAACAGGCUGCUCCCCCC - 87
Evidence experimental
unknown

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010