Stem-loop mtr-MIR5273

Accession

MI0018411

Description

Medicago truncatula mtr-MIR5273 precursor miRNA

Sequence

5231 reads, 41.0 reads per million, 111 experiments

acaugcuUAAACCUUCAAAGAUUAUUAGAacaccuaaggaauUAGGGGCUGUAGUUUGAGAAGAGGgucuuaagucaa
....((((((((((((..(((((((.((....(((((....)))))..))))))))).....)))))).))))))...

Structure

acau      -      ---AA       U  Aaca     g 
    gcuUAA ACCUUC     AGAUUAU AG    ccuaa g
    |||||| ||||||     ||||||| ||    |||||  
    ugaauu ugGGAG     UUUGAUG UC    GGAUu a
-aac      c      AAGAG       -  --GG     a 

Annotation confidence Low

Genome context

chr3: 30065315-30065392 [+]

Mature mtr-miR5273-5p

• Accession: MIMAT0055172
• Description: Medicago truncatula mtr-miR5273-5p mature miRNA
• Sequence: 8 - UAAACCUUCAAAGAUUAUUAGA - 29
• Evidence: experimental ; unknown

Mature mtr-miR5273-3p

• Accession: MIMAT0021308
• Description: Medicago truncatula mtr-miR5273-3p mature miRNA
• Sequence: 43 - UAGGGGCUGUAGUUUGAGAAGAGG - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010