Stem-loop mtr-MIR5272c

Accession

MI0018407

Description

Medicago truncatula mtr-MIR5272c precursor miRNA

Sequence

26292 reads, 226.0 reads per million, 111 experiments

uuggaaguGAAUUGAUUUAUGUUUGGAUACACuuuacuagaagugauucuuacGAAUUGAUGUUGUUUGGAUAG
((.(((....((((((((..((..((((.((((((....))))))))))..))))))))))....))).))...

Structure

---  g   guGA        AU  UU    A      a 
   uu gaa    AUUGAUUU  GU  GGAU CACuuu c
   || |||    ||||||||  ||  |||| ||||||  
   AG UUU    UAGUUAAG  ca  cuua gugaag u
GAU  G   GUUG        --  uu    -      a 

Annotation confidence Low

Genome context

chr5: 40796135-40796208 [-]

Mature mtr-miR5272c-5p

• Accession: MIMAT0021304
• Description: Medicago truncatula mtr-miR5272c-5p mature miRNA
• Sequence: 9 - GAAUUGAUUUAUGUUUGGAUACAC - 32
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5272c-3p

• Accession: MIMAT0055168
• Description: Medicago truncatula mtr-miR5272c-3p mature miRNA
• Sequence: 54 - GAAUUGAUGUUGUUUGGAUAG - 74
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010