miRBase entry: mtr-MIR5271e

Stem-loop mtr-MIR5271e


Accession
MI0018404
Description
Medicago truncatula mtr-MIR5271e precursor miRNA


Sequence

9148 reads, 70.0 reads per million, 111 experiments
ugguucgguuCGGAUAAUUGUGGUUACUAACGGUucaguucgguuagugaguuGUUAUCAAAAUAAUGGUUCga
(((.((((((..((((((...(.((((((((.(.......).)))))))).).))))))..)))..))).))).

Structure
-   u   --   CG      UGU G        G Uu 
 ugg ucg  guu  GAUAAU   G UUACUAAC G  c
 ||| |||  |||  ||||||   | |||||||| |  a
 gCU GGU  UAA  CUAUUG   u agugauug c  g
a   U   AA   AA      --u g        g uu 


Annotation confidence Low
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Genome context
chr3: 33600877-33600950 [-]

Database links

Mature mtr-miR5271e-5p

Accession MIMAT0021301
Description Medicago truncatula mtr-miR5271e-5p mature miRNA
Sequence 11 - CGGAUAAUUGUGGUUACUAACGGU - 34
Evidence experimental
Illumina [1]

Mature mtr-miR5271e-3p

Accession MIMAT0055165
Description Medicago truncatula mtr-miR5271e-3p mature miRNA
Sequence 54 - GUUAUCAAAAUAAUGGUUC - 72
Evidence experimental
unknown

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010