miRBase entry: mtr-MIR5271d

Stem-loop mtr-MIR5271d


Accession
MI0018403
Description
Medicago truncatula mtr-MIR5271d precursor miRNA


Sequence

7666 reads, 67.0 reads per million, 111 experiments
uuugguuCGGAUAAUUGUGGUUACUAACGGUucaguucgguuaaugaauuGUUAUCAAAAUAAUGGUUCGGUUCaaga
(((((.((((((.(((((......((((((((((..........)))))))))).....))))).)))))).))))).

Structure
-     u      A     GGUUAC          guuc 
 uuugg uCGGAU AUUGU      UAACGGUuca    g
 ||||| |||||| |||||      ||||||||||     
 gaaCU GGCUUG UAAUA      AUUGuuaagu    g
a     U      G     -AAACU          aauu 


Annotation confidence Low
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Genome context
chr4: 19776611-19776688 [-]

Database links

Mature mtr-miR5271d-5p

Accession MIMAT0021300
Description Medicago truncatula mtr-miR5271d-5p mature miRNA
Sequence 8 - CGGAUAAUUGUGGUUACUAACGGU - 31
Evidence experimental
Illumina [1]

Mature mtr-miR5271d-3p

Accession MIMAT0055164
Description Medicago truncatula mtr-miR5271d-3p mature miRNA
Sequence 51 - GUUAUCAAAAUAAUGGUUCGGUUC - 74
Evidence experimental
unknown

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010