miRBase entry: mtr-MIR5270a

Stem-loop mtr-MIR5270a


Accession
MI0018398
Description
Medicago truncatula mtr-MIR5270a precursor miRNA


Sequence

3744 reads, 38.0 reads per million, 111 experiments
uucuucguuuaucGAGGAGGAGUAGUUUUAGGUCAUUcuuuuguguggcGUUUGAUUUCGCGUCUUGUCGACUgauguauu
.....((((..((((.((((.((((((..(.(((((.(....).))))).)..))))..)).)))).))))..))))....

Structure
uucuu    ua    G    A  --    UU G     U u 
     cguu  ucGA GAGG GU  AGUU  A GUCAU c u
     ||||  |||| |||| ||  ||||  | ||||| |  
     guag  AGCU UUCU CG  UUAG  U cggug g u
-uuau    UC    G    G  CU    UU G     u u 


Annotation confidence Low
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Genome context
chr1: 4812371-4812451 [+]

Database links

Mature mtr-miR5270a-5p

Accession MIMAT0021295
Description Medicago truncatula mtr-miR5270a-5p mature miRNA
Sequence 14 - GAGGAGGAGUAGUUUUAGGUCAUU - 37
Evidence experimental
Illumina [1]

Mature mtr-miR5270a-3p

Accession MIMAT0055159
Description Medicago truncatula mtr-miR5270a-3p mature miRNA
Sequence 50 - GUUUGAUUUCGCGUCUUGUCGACU - 73
Evidence experimental
unknown

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010