Stem-loop mtr-MIR5268b

Accession

MI0018395

Description

Medicago truncatula mtr-MIR5268b precursor miRNA

Sequence

3315 reads, 29.0 reads per million, 111 experiments

uaguauaaaCCAGAGUGGAAUGAAGAUAUGGUUaucagugaggcagugguaugacaacaaagucugaauguuucuggaagcCAUGUUGAUUAAGAAAUUUCGGUUuaagaga
.....((((((.((((....(((.(((((((((.(((..((((((....((.(((......)))))..))))))))).)))))))))..)))....)))).)))))).....

Structure

uagua      A    GGAA   -A         a   gu      gugg  u   aa 
     uaaaCC GAGU    UGA  GAUAUGGUU uca  gaggca    ua gac  c
     |||||| ||||    |||  ||||||||| |||  ||||||    || |||   
     auUUGG UUUA    AUU  UUGUACcga ggu  cuuugu    gu cug  a
agaga      C    AAGA   AG         a   --      --aa  -   aa 

Annotation confidence Low

Genome context

chr1: 29702439-29702550 [+]

Mature mtr-miR5268b-5p

• Accession: MIMAT0021292
• Description: Medicago truncatula mtr-miR5268b-5p mature miRNA
• Sequence: 10 - CCAGAGUGGAAUGAAGAUAUGGUU - 33
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5268b-3p

• Accession: MIMAT0055156
• Description: Medicago truncatula mtr-miR5268b-3p mature miRNA
• Sequence: 82 - CAUGUUGAUUAAGAAAUUUCGGUU - 105
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010