miRBase entry: mtr-MIR5268a

Stem-loop mtr-MIR5268a


Accession
MI0018394
Description
Medicago truncatula mtr-MIR5268a precursor miRNA


Sequence

3402 reads, 31.0 reads per million, 111 experiments
uaguauaaaCCAGAGUGGAAUGAAGAUAUGGUUaucagugaggcagugguaugacaacaaagucugaauguuucuggaagccAUGUUGAUUAAGAAAUUUCGGUUUaagaga
.....((((((.((((....(((.(((((((((.(((..((((((....((.(((......)))))..))))))))).)))))))))..)))....)))).)))))).....

Structure
uagua      A    GGAA   -A         a   gu      gugg  u   aa 
     uaaaCC GAGU    UGA  GAUAUGGUU uca  gaggca    ua gac  c
     |||||| ||||    |||  ||||||||| |||  ||||||    || |||   
     aUUUGG UUUA    AUU  UUGUAccga ggu  cuuugu    gu cug  a
agaga      C    AAGA   AG         a   --      --aa  -   aa 


Annotation confidence Low
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Genome context
chr1: 1965868-1965979 [-]

Database links

Mature mtr-miR5268a-5p

Accession MIMAT0021291
Description Medicago truncatula mtr-miR5268a-5p mature miRNA
Sequence 10 - CCAGAGUGGAAUGAAGAUAUGGUU - 33
Evidence experimental
Illumina [1]

Mature mtr-miR5268a-3p

Accession MIMAT0055155
Description Medicago truncatula mtr-miR5268a-3p mature miRNA
Sequence 83 - AUGUUGAUUAAGAAAUUUCGGUUU - 106
Evidence experimental
unknown

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010