miRBase entry: mtr-MIR5267i

Stem-loop mtr-MIR5267i


Accession
MI0018387
Description
Medicago truncatula mtr-MIR5267i precursor miRNA


Sequence

10050 reads, 97.0 reads per million, 111 experiments
caaauccuauAGGCAUUUGCUAGAAUACACCCACuuauuuuuuagaauGAGUAUUUUAGCAAGUGAAUAAuuaaaaagugguua
.........((..(((((((((((((......((((((((....)))))))))))))))))))))..))...............

Structure
------caaauccua  GG             ACACCC        u 
               uA  CAUUUGCUAGAAU      ACuuauuu u
               ||  |||||||||||||      ||||||||  
               AU  GUGAACGAUUUUA      UGAGuaag u
auuggugaaaaauuA  AA             ------        a 


Annotation confidence Low
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Genome context
chr2: 28905565-28905648 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR5267i
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR5267i-5p

Accession MIMAT0021284
Description Medicago truncatula mtr-miR5267i-5p mature miRNA
Sequence 11 - AGGCAUUUGCUAGAAUACACCCAC - 34
Evidence experimental
Illumina [1]

Mature mtr-miR5267i-3p

Accession MIMAT0055148
Description Medicago truncatula mtr-miR5267i-3p mature miRNA
Sequence 49 - GAGUAUUUUAGCAAGUGAAUAA - 70
Evidence experimental
unknown

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010