miRBase entry: mtr-MIR5258

Stem-loop mtr-MIR5258


Accession
MI0018362
Description
Medicago truncatula mtr-MIR5258 precursor miRNA


Sequence

6794 reads, 69.0 reads per million, 111 experiments
gcgaaacaucuuuUCAAGUGACAAGGAAGAUCUUgauaacucaaaugcaaugcaggcaugacuuuaucauuugauaaguuccaUAUGUCACUAUUCAGAAUUGCauucca
((((....(((.....(((((((.((((.(((.((((((.....((((.......))))....))))))...)))...))))...)))))))....))).))))......

Structure
------    aaca   uuUCA       --A    --G   --U      cucaa    aa 
      gcga    ucu     AGUGACA   GGAA   AUC   Ugauaa     augc  u
      ||||    |||     |||||||   ||||   |||   ||||||     ||||  g
      CGUU    AGA     UCACUGU   ccuu   uag   acuauu     uacg  c
accuua    ---A   -CUUA       AUa    gaa   uuu      -ucag    ga 


Annotation confidence Low
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Genome context
chr7: 22083207-22083316 [-]

Database links

Mature mtr-miR5258-5p

Accession MIMAT0021258
Description Medicago truncatula mtr-miR5258-5p mature miRNA
Sequence 14 - UCAAGUGACAAGGAAGAUCUU - 34
Evidence experimental
Illumina [1]

Mature mtr-miR5258-3p

Accession MIMAT0055127
Description Medicago truncatula mtr-miR5258-3p mature miRNA
Sequence 84 - UAUGUCACUAUUCAGAAUUGC - 104
Evidence experimental
unknown

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010