Stem-loop mtr-MIR5254

Accession

MI0018356

Description

Medicago truncatula mtr-MIR5254 precursor miRNA

Literature search

1 open access papers mention mtr-MIR5254
(1 sentences)

Sequence

2932 reads, 28.0 reads per million, 111 experiments

gauguguagcugaAGGAGGUGGAAGCAUUUGUGAcagaauuguauaagaaaagaauAAUCACAAUGCCUUUCCAguuuagcacauucaaguggg
((.((((.(((((....(.((((((((((.((((....(((.(........).)))..)))))))))..))))).)))))))))))).......

Structure

-------  u    a     AGGA G     --     U    caga   g aua 
       ga gugu gcuga    G UGGAA  GCAUU GUGA    auu u   a
       || |||| |||||    | |||||  ||||| ||||    ||| |    
       cu uaca cgauu    u ACCUU  CGUAA CACU    uaa a   g
gggugaa  -    -     ---- g     UC     -    --AA   g aaa 

Annotation confidence Low

Genome context

chr6: 16973918-16974011 [-]

Mature mtr-miR5254-5p

• Accession: MIMAT0021252
• Description: Medicago truncatula mtr-miR5254-5p mature miRNA
• Sequence: 14 - AGGAGGUGGAAGCAUUUGUGA - 34
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5254-3p

• Accession: MIMAT0055124
• Description: Medicago truncatula mtr-miR5254-3p mature miRNA
• Sequence: 57 - AAUCACAAUGCCUUUCCA - 74
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010