Stem-loop mtr-MIR5253

Accession

MI0018355

Description

Medicago truncatula mtr-MIR5253 precursor miRNA

Sequence

gauuaucggagGAUGAAAAUGAUUAUGUUGGAggguuaggguuuggguuucaagcauccauucaggauagauguuuuggacaacaacucaucuucaaggguuuucaaucgauuaucggaagaugaaaaugauugaaaacgcuugaagaugaguuguuguccacagcaucuaucccauaauggaugcuugaaacccaaaaccuaacccuucaacauaaucauuuucauauucggauaauc
(((((((.(((.((((((((((((((((((((((((((((..((((((((((((((((((((..(((((((((((.((((((((((((((((((((((.(((((((((((.(((((....)))))...))))))))))).)))))))))))))))))))))).)))))))))))...))))))))))))))))))))..)))))))))))))))))))))))))))).))).)))))))

Structure

       g   G                            gu                    -ca           u                      g           --a     g 
gauuauc gag AUGAAAAUGAUUAUGUUGGAggguuagg  uuggguuucaagcauccauu   ggauagauguu uggacaacaacucaucuucaag guuuucaaucg   uuauc g
||||||| ||| ||||||||||||||||||||||||||||  ||||||||||||||||||||   ||||||||||| |||||||||||||||||||||| |||||||||||   |||||  
cuaauag cuu uacuuuuacuaauacaacuucccaaucc  aacccaaaguucguagguaa   ccuaucuacga accuguuguugaguagaaguuc caaaaguuagu   aguag a
       g   a                            aa                    uac           c                      g           aaa     a 

Annotation confidence Not enough data

Genome context

chr6: 12560384-12560622 [+]

Mature mtr-miR5253

• Accession: MIMAT0021251
• Description: Medicago truncatula mtr-miR5253 mature miRNA
• Sequence: 12 - GAUGAAAAUGAUUAUGUUGGA - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010