miRBase entry: mtr-MIR5245

Stem-loop mtr-MIR5245


Accession
MI0018346
Description
Medicago truncatula mtr-MIR5245 precursor miRNA


Sequence

1582 reads, 8.0 reads per million, 100 experiments
agaaggaucgaCAUCGUAGAACACAGGCAGUAcaaccuggcCUGUGGUUCUGUGACGCACCAuuauuugc
....((..((...(((((((((((((((((......)).)))))).)))))))))))..)).........

Structure
-----agaa  au  aCA         -      -  UA 
         gg  cg   UCGUAGAAC ACAGGC AG  c
         ||  ||   ||||||||| |||||| ||   
         CC  GC   AGUGUCUUG UGUCcg uc  a
cguuuauuA  AC  ---         G      g  ca 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr4: 3454832-3454901 [+]

Database links

Mature mtr-miR5245-5p

Accession MIMAT0021241
Description Medicago truncatula mtr-miR5245-5p mature miRNA
Sequence 12 - CAUCGUAGAACACAGGCAGUA - 32
Evidence experimental
Illumina [1]

Mature mtr-miR5245-3p

Accession MIMAT0055115
Description Medicago truncatula mtr-miR5245-3p mature miRNA
Sequence 42 - CUGUGGUUCUGUGACGCACCA - 62
Evidence experimental
unknown

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010