Stem-loop mtr-MIR5241a

Accession

MI0018340

Description

Medicago truncatula mtr-MIR5241a precursor miRNA

Literature search

1 open access papers mention mtr-MIR5241a
(1 sentences)

Sequence

5457 reads, 43.0 reads per million, 111 experiments

gcaauuaaaguaaUGGGCUCAUUUUUGUUUGGUuguaaugUGACUGAAUGGAAGAGUGCAUuggcuagauugaga
.(((((....(((((.((((..((((((((((((.......)))))))))))))))).)))))....)))))...

Structure

--g     aaag     G    AU            gu 
   caauu    uaaUG GCUC  UUUUGUUUGGUu  a
   |||||    ||||| ||||  ||||||||||||  a
   guuag    guUAC UGAG  AAGGUAAGUCAG  u
aga     aucg     G    --            Ug 

Annotation confidence Low

Genome context

chr2: 14773644-14773718 [+]

Mature mtr-miR5241a-5p

• Accession: MIMAT0055109
• Description: Medicago truncatula mtr-miR5241a-5p mature miRNA
• Sequence: 14 - UGGGCUCAUUUUUGUUUGGU - 33
• Evidence: experimental ; unknown

Mature mtr-miR5241a-3p

• Accession: MIMAT0021235
• Description: Medicago truncatula mtr-miR5241a-3p mature miRNA
• Sequence: 41 - UGACUGAAUGGAAGAGUGCAU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010