miRBase entry: mtr-MIR5240

Stem-loop mtr-MIR5240


Accession
MI0018339
Description
Medicago truncatula mtr-MIR5240 precursor miRNA


Sequence

11726 reads, 116.0 reads per million, 111 experiments
aauggcaagaUUGAAAAAAUUGUGGAUUUGAgaauuggaaucgcuUCCACAAUAUUAAUCGACUCAagcaau
....((..((((((....((((((((..(((.........)))..)))))))).....)))).))..))...

Structure
aaug  aa  -    -AAAA        UU   gaa 
    gc  ga UUGA     AUUGUGGA  UGA   u
    ||  || ||||     ||||||||  |||   u
    cg  CU AGCU     UAACACCU  gcu   g
-uaa  aA  C    AAUUA        uc   aag 


Annotation confidence Low
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Genome context
chr1: 12268710-12268781 [-]

Database links

Mature mtr-miR5240-5p

Accession MIMAT0021234
Description Medicago truncatula mtr-miR5240-5p mature miRNA
Sequence 11 - UUGAAAAAAUUGUGGAUUUGA - 31
Evidence experimental
Illumina [1]

Mature mtr-miR5240-3p

Accession MIMAT0055108
Description Medicago truncatula mtr-miR5240-3p mature miRNA
Sequence 46 - UCCACAAUAUUAAUCGACUCA - 66
Evidence experimental
unknown

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010