Stem-loop mtr-MIR2592bk

Accession

MI0018336

Description

Medicago truncatula mtr-MIR2592bk precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592bk
(2 sentences)

Sequence

4646 reads, 38.0 reads per million, 111 experiments

ccaauauucgacuggcauucccauuguuccugucaaaagauuaaauucuuguuaggcuuguuuaaaugaaaguauugAAGUGUCAAGGAAUGAACCUCAUUcuuuugacauuugaauaccaucauuuaaucccaguccaacaacaauuuaaucuuuugaaUGGAACAUUGGGAAUGCCGGUcguauauugg
(((((((.(((((((((((((((.((((((..(((((((((((((((.(((((.((((.(.((((((((..(((((.((((((((((((((((...)))))).)))))))))).)))))..))))))))..).)))).))))).)))))))))))))))..)))))).))))))))))))))).)))))))

Structure

       u               u      ug               c     a    u -u        aa     g          -      A 
ccaauau cgacuggcauuccca uguucc  ucaaaagauuaaauu uuguu ggcu g  uuaaauga  guauu AAGUGUCAAG GAAUGA  
||||||| ||||||||||||||| ||||||  ||||||||||||||| ||||| |||| |  ||||||||  ||||| |||||||||| |||||| C
gguuaua gcUGGCCGUAAGGGU ACAAGG  aguuuucuaauuuaa aacaa cuga c  aauuuacu  cauaa uuuacaguuu cUUACU  
       u               U      Ua               c     c    c cu        ac     g          u      C 

Annotation confidence Low

Genome context

chr3: 32783558-32783748 [+]

Mature mtr-miR2592bk-5p

• Accession: MIMAT0055106
• Description: Medicago truncatula mtr-miR2592bk-5p mature miRNA
• Sequence: 78 - AAGUGUCAAGGAAUGAACCUCAUU - 101
• Evidence: experimental ; unknown

Mature mtr-miR2592bk-3p

• Accession: MIMAT0021231
• Description: Medicago truncatula mtr-miR2592bk-3p mature miRNA
• Sequence: 161 - UGGAACAUUGGGAAUGCCGGU - 181
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010