Stem-loop mtr-MIR2592bj

Accession

MI0018335

Description

Medicago truncatula mtr-MIR2592bj precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592bj
(2 sentences)

Sequence

6604 reads, 54.0 reads per million, 111 experiments

ccaauauuugaccggaauucccacuguuccugucaaaagauuaaauucuuguuaggcugauuuaaaugAAGGUAUUGAAGUGUCAAGGAAUGgaccucauucuuuucacauuugaauaccaucauuuaaucccaaccuaacaagaauuuaaucuuuugaaUGGAACAUUGGGAAUGCCGGUcgaauauugg
(((((((((((((((.(((((((.((((((..((((((((((((((((((((((((.((..((((((((.((((((.((((((.((((((((.....))))))))..)))))).)))))).))))))))...)).))))))))))))))))))))))))..)))))).))))))).)))))))))))))))

Structure

               a       c      ug                        c  -au        A      G      -C        g 
ccaauauuugaccgg auuccca uguucc  ucaaaagauuaaauucuuguuagg ug   uuaaaugA GGUAUU AAGUGU  AAGGAAUG a
||||||||||||||| ||||||| ||||||  |||||||||||||||||||||||| ||   |||||||| |||||| ||||||  |||||||| c
gguuauaagcUGGCC UAAGGGU ACAAGG  aguuuucuaauuuaagaacaaucc ac   aauuuacu ccauaa uuuaca  uuucuuac c
               G       U      Ua                        a  ccu        a      g      cu        u 

Annotation confidence Low

Genome context

chr2: 32404919-32405109 [+]

Mature mtr-miR2592bj-5p

• Accession: MIMAT0055105
• Description: Medicago truncatula mtr-miR2592bj-5p mature miRNA
• Sequence: 69 - AAGGUAUUGAAGUGUCAAGGAAUG - 92
• Evidence: experimental ; unknown

Mature mtr-miR2592bj-3p

• Accession: MIMAT0021230
• Description: Medicago truncatula mtr-miR2592bj-3p mature miRNA
• Sequence: 161 - UGGAACAUUGGGAAUGCCGGU - 181
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010