Stem-loop mtr-MIR2592bi

Accession

MI0018334

Description

Medicago truncatula mtr-MIR2592bi precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592bi
(2 sentences)

Sequence

5623 reads, 48.0 reads per million, 111 experiments

ccaauauucgacccgcauucccauugucccugucaaaagauuaaauucuuguuaguccgguuuaaaugaagguauugAAGUGUCAAGGAAUGAACCUCAUUcuuuucacacuuaaauaccgucauuuaaaccaaaccuaacaagaauuuaaucuuuugaaUGGAACAUUGGGAAUGCCGGUcguauauugg
(((((((.(((((.(((((((((.(((.((..(((((((((((((((((((((((...(((((((((((.((((((.((((((.(((((((((...)))))))))..)))))).)))))).)))))))))))....)))))))))))))))))))))))..)).))).))))))))).))))).)))))))

Structure

       u     c         u   c  ug                       -ucc           a      g      -C         A 
ccaauau cgacc gcauuccca ugu cc  ucaaaagauuaaauucuuguuag    gguuuaaauga gguauu AAGUGU  AAGGAAUGA  
||||||| ||||| ||||||||| ||| ||  |||||||||||||||||||||||    ||||||||||| |||||| ||||||  ||||||||| C
gguuaua gcUGG CGUAAGGGU ACA GG  aguuuucuaauuuaagaacaauc    ccaaauuuacu ccauaa uucaca  uuucUUACU  
       u     C         U   A  Ua                       caaa           g      a      cu         C 

Annotation confidence Low

Genome context

AC225507.19: 185937-186127 [+]

Mature mtr-miR2592bi-5p

• Accession: MIMAT0055104
• Description: Medicago truncatula mtr-miR2592bi-5p mature miRNA
• Sequence: 78 - AAGUGUCAAGGAAUGAACCUCAUU - 101
• Evidence: experimental ; unknown

Mature mtr-miR2592bi-3p

• Accession: MIMAT0021229
• Description: Medicago truncatula mtr-miR2592bi-3p mature miRNA
• Sequence: 161 - UGGAACAUUGGGAAUGCCGGU - 181
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010