miRBase entry: mtr-MIR5236d

Stem-loop mtr-MIR5236d


Accession
MI0018330
Description
Medicago truncatula mtr-MIR5236d precursor miRNA


Sequence

47606 reads, 444.0 reads per million, 111 experiments
ggaucauuuugaUGAAUUUCGGGCAGAUUUGGUgggaaauagggggaaaucuugcuguucuugacuuugggcaagcacaggccaaacaugcAGUUCAACAUUUGUUCAUGCCUCG
.((.((...((.((((((....(((..((((((......(((((.....)))))((((.((((........)))).))))))))))..))))))))).))..)).))........

Structure
-------g  u  uuu  a      UCGG   GA      gggaaauagggggaaaucuug    u    acu 
        ga ca   ug UGAAUU    GCA  UUUGGU                     cugu cuug   u
        || ||   || ||||||    |||  ||||||                     |||| ||||    
        CU GU   AC ACUUGA    cgu  aaaccg                     gaca gaac   u
GCUCCGUA  U  -UU  A      ----   ac      ---------------------    c    ggg 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mtr-miR5236d-5p

Accession MIMAT0021225
Description Medicago truncatula mtr-miR5236d-5p mature miRNA
Sequence 13 - UGAAUUUCGGGCAGAUUUGGU - 33
Evidence experimental
Illumina [1]

Mature mtr-miR5236d-3p

Accession MIMAT0055100
Description Medicago truncatula mtr-miR5236d-3p mature miRNA
Sequence 92 - AGUUCAACAUUUGUUCAUGCCUCG - 115
Evidence experimental
unknown

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010