Stem-loop mtr-MIR5236a

Accession

MI0018327

Description

Medicago truncatula mtr-MIR5236a precursor miRNA

Sequence

47564 reads, 443.0 reads per million, 111 experiments

ggaucauuuugaUGAAUUUCGGGCAGAUUUGGUgggaaauagggggaaaucuugcuguucuugacuuugggcaagcaCAGGCCAAACAUGCAGUUCAACauuuguucaugccucg
.((.((...((.((((((....(((..((((((......(((((.....)))))((((.((((........)))).))))))))))..))))))))).))..)).))........

Structure

-------g  u  uuu  a      UCGG   GA      gggaaauagggggaaaucuug    u    acu 
        ga ca   ug UGAAUU    GCA  UUUGGU                     cugu cuug   u
        || ||   || ||||||    |||  ||||||                     |||| ||||    
        cu gu   aC ACUUGA    CGU  AAACCG                     GACa gaac   u
gcuccgua  u  -uu  A      ----   AC      ---------------------    c    ggg 

Annotation confidence Medium

Genome context

Unknown

Mature mtr-miR5236a-5p

• Accession: MIMAT0021222
• Description: Medicago truncatula mtr-miR5236a-5p mature miRNA
• Sequence: 13 - UGAAUUUCGGGCAGAUUUGGU - 33
• Evidence: experimental ; Illumina [1]

Mature mtr-miR5236a-3p

• Accession: MIMAT0055097
• Description: Medicago truncatula mtr-miR5236a-3p mature miRNA
• Sequence: 78 - CAGGCCAAACAUGCAGUUCAAC - 99
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010