miRBase entry: mtr-MIR5232

Stem-loop mtr-MIR5232


Accession
MI0018322
Description
Medicago truncatula mtr-MIR5232 precursor miRNA


Sequence

874218 reads, 7249.0 reads per million, 111 experiments
uccuaugaUACAUGUCGCUCUCACCUGAAgcauagcugcccaaugcuuucauaacaucaugagagaauuaagaaagaagcugccaucaaauugAACGCUGGAAGGAGCCAUGAGAGUuggcauuaccaacg
...........(((((((((((((((..(((.(((((........(((((((......)))))))............))))).((......))...)))...))).....)))))).))))))........

Structure
uccuaugaUAC      -      -----   -GA   -------------a     ----gcccaaug       aa 
           AUGUCG CUCUCA     CCU   Agc              uagcu            cuuucau  c
           |||||| ||||||     |||   |||              |||||            |||||||   
           uacggu GAGAGU     GGA   UCG              gucga            gagagua  a
---gcaaccau      U      ACCGA   AGG   CAAguuaaacuacc     agaaagaauuaa       cu 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mtr-miR5232-5p

Accession MIMAT0021217
Description Medicago truncatula mtr-miR5232-5p mature miRNA
Sequence 9 - UACAUGUCGCUCUCACCUGAA - 29
Evidence experimental
Illumina [1]

Mature mtr-miR5232-3p

Accession MIMAT0055093
Description Medicago truncatula mtr-miR5232-3p mature miRNA
Sequence 94 - AACGCUGGAAGGAGCCAUGAGAGU - 117
Evidence experimental
unknown

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010