Stem-loop mtr-MIR2670e

Accession

MI0018313

Description

Medicago truncatula mtr-MIR2670e precursor miRNA

Sequence

3724 reads, 39.0 reads per million, 111 experiments

uuugagggaaguAGUGGUCCGUUAGGUUGGGGAAaaagacaucaucccuugagguaaaauuagguuugcuuccuuuuacucccaaaaucuuuuuaccguggguaaaaagaaucaucauggggguauaaaaggaaccaaauuuaaauuuaaaucaaggggucuugauguauuuuUCUCAACAGGACGGAUCACUAcuuuacccaag
.(((.((((((((((((((((((..(((((((((((..((((((((((((((..((((.(((((((((.(((((((((((((((...((((((((((...)))))))))).......))))))))..))))))).))))))))).))))..))))))))...)))))).)))))))))))..)))))))))))))))).))))).

Structure

u   a  -                AG           ag      ---        gg    a         c       --        ----aaa          g 
 uug gg gaaguAGUGGUCCGUU  GUUGGGGAAaa  acauca   ucccuuga  uaaa uuagguuug uuccuuu  uacuccca       ucuuuuuacc  
 ||| || ||||||||||||||||  |||||||||||  ||||||   ||||||||  |||| ||||||||| |||||||  ||||||||       |||||||||| u
 aac cc uuucAUCACUAGGCAG  CAACUCUuuuu  uguagu   ggggaacu  auuu aauuuaaac aaggaaa  augggggu       agaaaaaugg  
g   -  a                GA           -a      ucu        aa    a         c       au        acuacua          g 

Annotation confidence Medium

Genome context

chr2: 19466312-19466516 [-]

Mature mtr-miR2670e-5p

• Accession: MIMAT0055084
• Description: Medicago truncatula mtr-miR2670e-5p mature miRNA
• Sequence: 13 - AGUGGUCCGUUAGGUUGGGGAA - 34
• Evidence: experimental ; unknown

Mature mtr-miR2670e-3p

• Accession: MIMAT0021208
• Description: Medicago truncatula mtr-miR2670e-3p mature miRNA
• Sequence: 174 - UCUCAACAGGACGGAUCACUA - 194
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010