Stem-loop mtr-MIR2592bf

Accession

MI0018309

Description

Medicago truncatula mtr-MIR2592bf precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592bf
(2 sentences)

Sequence

38002 reads, 250.0 reads per million, 111 experiments

auuaacaacuugauuccgccagaagaucgucauuaguuaggguaaggugcauuccaacuacaacaauuaucuuaccgcugaaaugggguaauucaaacuugccaaacggccaggacucaagcauuucgcucggcauucauguuuuuccuuugaaaagauuaaauucuuuuuAGGCUGGUUUAGAUGAAGGUAuuaagugucaaggaaugaaccucauuuuguuggcacuugaauaccaucaucuaaagcaaaccuaacaaaaauuuaucuuuucaaaggaaaacaugaaagccgggugaaauguuuuaguccugcuguuugacaaguuugaauuuacaucauucaaagguaagacaauuguuauaguuggaaugcacauuccaacuacAACAAUUGUCUUACUCUGGAUGGGgcaauucaaacuuguuaa
.(((((((.((((((((((((((((((.((...(((((.(((....((((((((((((((.(((((((.(((((((..((((.((((..((((((((((((.((((((((.((((((.((((((((((((((((.((((((((((.(((((((((((((.(((((.((.(((((.((.(((((((((.(((((((((((((((.((((((...))))))..)))))))))).))))).))))))))).))..))))).)).)))))))))))))))))))))))))))).)))))))))))))))).)))))))))))))).))))))))))))..).)))))))..))))))).))))))).))))))))))))))..)))))))).....)).))))...))))).)))))....))))..)))))))

Structure

a       -c    ----     -     ---    c  --cau     a   uaag              c       a       gc    a   - gu            c        c      c                a          u             u     c  u     -C  G         A     -          -g      a 
 uuaacaa  uuga    uuccg ccaga   agau gu     uaguu ggg    gugcauuccaacua aacaauu ucuuacc  ugaa ugg g  aauucaaacuug caaacggc aggacu aagcauuucgcucggc uucauguuuu ccuuugaaaagau aaauu uu uuAGG  UG UUUAGAUGA GGUAu uaagugucaa  gaauga  
 |||||||  ||||    ||||| |||||   |||| ||     ||||| |||    |||||||||||||| ||||||| |||||||  |||| ||| |  |||||||||||| |||||||| |||||| |||||||||||||||| |||||||||| ||||||||||||| ||||| || |||||  || ||||||||| ||||| ||||||||||  |||||| c
 aauuguu  aacu    gGGGU GGUCU   UCUG UA     aucaa ccu    cacguaagguugau uuguuaa agaaugg  acuu acu c  uuaaguuugaac guuugucg uccuga uuuguaaagugggccg aaguacaaaa ggaaacuuuucua uuuaa aa aaucc  ac aaaucuacu ccaua guucacgguu  uuuacu  
-       ca    uaac     A     CAU    U  ACAAc     -   --ua              a       c       aa    -   a au            a        -      u                a          -             -     a  c     aa  g         a     a          gu      c 

Annotation confidence Low

Genome context

chr7: 30663785-30664214 [-]

Mature mtr-miR2592bf-5p

• Accession: MIMAT0021203
• Description: Medicago truncatula mtr-miR2592bf-5p mature miRNA
• Sequence: 172 - AGGCUGGUUUAGAUGAAGGUA - 192
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592bf-3p

• Accession: MIMAT0055082
• Description: Medicago truncatula mtr-miR2592bf-3p mature miRNA
• Sequence: 389 - AACAAUUGUCUUACUCUGGAUGGG - 412
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010