Stem-loop mtr-MIR2592bd

Accession

MI0018307

Description

Medicago truncatula mtr-MIR2592bd precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592bd
(2 sentences)

Sequence

314325 reads, 765.0 reads per million, 111 experiments

accugccaaaCAACAGGACUCGAGCAUUUCGcucggcauucauguuuuuccuuugaaaagauuaaauucuuguuaggcugguuuagaugaagguauuaagugucaaggaauaaaccagcagaauaccaucaucuaaaacacgccuaacaaaaauuuauucuuuucaaaggaaaacaugaaugcggggugAAAUGCUUGAGUCCUGUUGUUugacagguu
(((((.((((((((((((((((((((((((((((.(((((((((((((.((((((((((((.((((((.(((((((((((..((((((((.((((((...(((...((......)).))).)))))).))))))))..)).))))))))).)))))).))))))))))))))))))))))))).)))))))))))))))))))))))))))).))))).

Structure

-     c                            g             u            u      c         -  gu        a      aag   caa  aa 
 accug caaaCAACAGGACUCGAGCAUUUCGcuc gcauucauguuuu ccuuugaaaaga uaaauu uuguuaggc ug  uuagauga gguauu   ugu   gg  u
 ||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||| ||  |||||||| ||||||   |||   ||   
 uggac guUUGUUGUCCUGAGUUCGUAAAguggg cguaaguacaaaa ggaaacuuuucu auuuaa aacaauccg ac  aaucuacu ccauaa   acg   cc  a
u     a                            g             -            u      a         c  aa        a      --g   --a  aa 

Annotation confidence High

Genome context

chr7: 13077376-13077594 [+]

Mature mtr-miR2592bd-5p

• Accession: MIMAT0021201
• Description: Medicago truncatula mtr-miR2592bd-5p mature miRNA
• Sequence: 11 - CAACAGGACUCGAGCAUUUCG - 31
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592bd-3p

• Accession: MIMAT0055080
• Description: Medicago truncatula mtr-miR2592bd-3p mature miRNA
• Sequence: 190 - AAAUGCUUGAGUCCUGUUGUU - 210
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010