Stem-loop mtr-MIR2592bc

Accession

MI0018306

Description

Medicago truncatula mtr-MIR2592bc precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592bc
(2 sentences)

Sequence

15888 reads, 82.0 reads per million, 111 experiments

aauuuuuguuAGGCUGGUUUAGAUGAAGGUAuuaagugucaaggaaugaaccucauuucguugucacuugaauaucaucAUCUAAAGCAAGCCUAACAAAAAUu
((((((((((((((((.(((((((((.(((((((((((.((((((((((...))))))).))).)))))).))))).))))))))).).)))))))))))))))

Structure

               - G         A     -      u   -       a 
aauuuuuguuAGGCU G UUUAGAUGA GGUAu uaagug caa ggaauga  
||||||||||||||| | ||||||||| ||||| |||||| ||| ||||||| c
uUAAAAACAAUCCGA C AAAUCUAcu cuaua guucac guu cuuuacu  
               A G         a     a      u   g       c 

Annotation confidence Low

Genome context

chr6: 18079525-18079628 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592bc

Mature mtr-miR2592bc-5p

• Accession: MIMAT0021200
• Description: Medicago truncatula mtr-miR2592bc-5p mature miRNA
• Sequence: 11 - AGGCUGGUUUAGAUGAAGGUA - 31
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592bc-3p

• Accession: MIMAT0055079
• Description: Medicago truncatula mtr-miR2592bc-3p mature miRNA
• Sequence: 80 - AUCUAAAGCAAGCCUAACAAAAAU - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010