Stem-loop mtr-MIR2592bb

Accession

MI0018305

Description

Medicago truncatula mtr-MIR2592bb precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592bb
(2 sentences)

Sequence

28177 reads, 193.0 reads per million, 111 experiments

acggaaugaaugcaccuugcagcuacaacaauugucuuaccucugaaaugggguaauucaaauuugccaaacggccaggacucaagcauuucgcucggcauucauguuuuuccuuugaaaagauuaaauucucguuAGGCUGGUUUAGAUGAAGGUAuugaagugucaaggaauggaccucauucuuuugacauuugaauaccaucauuuaaucccagcuuaauaagaauuuaaucuuuugaauggaacauugggaaugucggacgaaaugcuugagucauguuguuugaccaguuugaauuuacccuauucaaagauaAGACAAUUGUUGUAGUUGGAAugcacauuucaacua
..((((((..((((..((.((((((((((((((((((((.((.((((.((((((((((((((((.(.((((((((...(((((((((((((((.(((((((((......((((.((.(((((((((((((((.((((((((((.((((((((.((((((.(((((((((((((((.....))))).)))))))))).)))))).))))))))..)))))))))).))))))))))))))).)).))))......))))))))).)))))))))))))))..)))))))).).)))))))).)))))))))))).)).)))))))))))))))))))).)))))))))))).....

Structure

---ac      aa    cc  g                    c  c    a        -        u c        cag               c         auguuu    u  g               c          -U        A      g          -     g 
     ggaaug  ugca  uu cagcuacaacaauugucuua cu ugaa ugggguaa uucaaauu g caaacggc   gacucaagcauuucg ucggcauuc      uucc uu aaaagauuaaauucu guuAGGCUGG  UUAGAUGA GGUAuu aagugucaag gaaug a
     ||||||  ||||  || |||||||||||||||||||| || |||| |||||||| |||||||| | ||||||||   ||||||||||||||| |||||||||      |||| || ||||||||||||||| ||||||||||  |||||||| |||||| |||||||||| ||||| c
     cuuuac  acgu  AA GUUGAUGUUGUUAACAGAau ga acuu aucccauu aaguuuga c guuuguug   cugaguucguaaagc ggcuguaag      aagg aa uuuucuaauuuaaga uaauucgacc  aauuuacu ccauaa uuuacaguuu cuuac c
aucaa      --    --  G                    a  a    -        u        c a        -ua               a         gguuac    u  g               a          cu        a      g          u     u 

Annotation confidence Low

Genome context

chr6: 1500881-1501235 [+]

Mature mtr-miR2592bb-5p

• Accession: MIMAT0021199
• Description: Medicago truncatula mtr-miR2592bb-5p mature miRNA
• Sequence: 137 - AGGCUGGUUUAGAUGAAGGUA - 157
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592bb-3p

• Accession: MIMAT0055078
• Description: Medicago truncatula mtr-miR2592bb-3p mature miRNA
• Sequence: 320 - AGACAAUUGUUGUAGUUGGAA - 340
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010