Stem-loop mtr-MIR2592az

Accession

MI0018303

Description

Medicago truncatula mtr-MIR2592az precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592az
(2 sentences)

Sequence

357058 reads, 907.0 reads per million, 111 experiments

accugccaaaCAACAGGACUCGAGCAUUUCGcucggcauucauguuuuuccuuugaaaagauuaaauucuuguuaggcugguuuagaugaagguauuaagugucaaggaaugaaccucauuucguuggcacuugaauaccaucaucuaaagcacgccuaacaaaaauuuaaucuuuucaaaggaaaacaugaaugucgggugAAAUGCUUGAGUCCUGUUGUUugacagguuu
(((((.((((((((((((((((((((((((((((((((((((((((((.(((((((((((((((((((.(((((((((((.(((((((((.((((((((((((((((((((((...))))))).)))))))))).))))).))))))))).)).))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)))))..

Structure

--     c                                          u                   c         -  g         a     -          -       a 
  accug caaaCAACAGGACUCGAGCAUUUCGcucggcauucauguuuu ccuuugaaaagauuaaauu uuguuaggc ug uuuagauga gguau uaagugucaa ggaauga  
  ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| || ||||||||| ||||| |||||||||| ||||||| c
  uggac guUUGUUGUCCUGAGUUCGUAAAgugggcuguaaguacaaaa ggaaacuuuucuaauuuaa aacaauccg ac aaaucuacu ccaua guucacgguu cuuuacu  
uu     a                                          -                   a         c  g         a     a          g       c 

Annotation confidence High

Genome context

chr5: 11099732-11099964 [+]

Mature mtr-miR2592az-5p

• Accession: MIMAT0021197
• Description: Medicago truncatula mtr-miR2592az-5p mature miRNA
• Sequence: 11 - CAACAGGACUCGAGCAUUUCG - 31
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592az-3p

• Accession: MIMAT0055076
• Description: Medicago truncatula mtr-miR2592az-3p mature miRNA
• Sequence: 203 - AAAUGCUUGAGUCCUGUUGUU - 223
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010