Stem-loop mtr-MIR2592aw

Accession

MI0018300

Description

Medicago truncatula mtr-MIR2592aw precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592aw
(2 sentences)

Sequence

299098 reads, 685.0 reads per million, 111 experiments

accugccaaaCAACAGGACUCGAGCAUUUCGcucggcauucauguuuuuccuuugaaaagauuaaauucuuguuaggcugguuuagaugaagguauuaggcgugaaggaaugaaccucauuucguuggcacuugaauaccaacgucuaaagcacgccuaacaaaaauuuauucuuuucaaaGGAAAACAUGAAUGCCGGGugaaaugcuugagcccuauuguuuugcagguuu
((((((.((((((.(((.((((((((((((((((((((((((((((((.((((((((((((.((((((.(((((((((((.((((((((..(((((((((.((.(((((((((...))))))).)).)).)))).)))))..)))))))).)).))))))))).)))))).)))))))))))))))))))))))))))))))))))))))))).))).)))))).))))))..

Structure

--      c      C   A                              u            u      c         -  g        aa     -    c  g  -       a 
  accugc aaaCAA AGG CUCGAGCAUUUCGcucggcauucauguuuu ccuuugaaaaga uaaauu uuguuaggc ug uuuagaug  gguau uagg gu aa ggaauga  
  |||||| |||||| ||| |||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| || ||||||||  ||||| |||| || || ||||||| c
  uggacg uuuguu ucc gaguucguaaaguGGGCCGUAAGUACAAAA GGaaacuuuucu auuuaa aacaauccg ac aaaucugc  ccaua guuc cg uu cuuuacu  
uu      u      a   c                              -            u      a         c  g        aa     a    a  g  g       c 

Annotation confidence Medium

Genome context

AC225526.13: 51752-51984 [+]

Mature mtr-miR2592aw-5p

• Accession: MIMAT0021194
• Description: Medicago truncatula mtr-miR2592aw-5p mature miRNA
• Sequence: 11 - CAACAGGACUCGAGCAUUUCG - 31
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592aw-3p

• Accession: MIMAT0055073
• Description: Medicago truncatula mtr-miR2592aw-3p mature miRNA
• Sequence: 182 - GGAAAACAUGAAUGCCGGG - 200
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010