Stem-loop mtr-MIR2592aq

Accession

MI0018294

Description

Medicago truncatula mtr-MIR2592aq precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592aq
(2 sentences)

Sequence

32583 reads, 220.0 reads per million, 111 experiments

uuaagguaaggugcauuccaacugcaacaauugucuuaccucugaaaugggguaauucaaacuugucaaacggccaggacucaagcauuucgcucggcauucauguuuuuccuuugaaaagauuaaauucuuguuAGGCUGGUUUAGAUGAAGGUAuuaagugucaaggaaugaacuucauuucguuggcaauugaauaccaucaucuaaagcaagccuaacaaaaauuuauuuuuuucaaaggaaaacaugaaugccgggugaaauguuugaguccuguuguuuggcaaguuugaauugaccccauucaaagguaAGACAAUUGUUGUAGUUGGAAugcacauuccaacug
....((....(((((((((((((((((((((((((((((((.((((.(((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((.((((((((((((.((((((.(((((((((((.(((((((((.((((((...(((((((((((((...))))))).))))))....)))))).))))))))).).)))))))))).)))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)))))))))).)))))))))))))))))))))))))))))))...)).....

Structure

-uuaa  uaag                               c    a      -                     c                                  u            u      c          - G         A      -aag      -       a 
     gg    gugcauuccaacugcaacaauugucuuaccu ugaa uggggu aauucaaacuugucaaacggc aggacucaagcauuucgcucggcauucauguuuu ccuuugaaaaga uaaauu uuguuAGGCU G UUUAGAUGA GGUAuu    ugucaa ggaauga  
     ||    ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| | ||||||||| ||||||    |||||| ||||||| c
     cc    cacguAAGGUUGAUGUUGUUAACAGAaugga acuu acccca uuaaguuugaacgguuuguug uccugaguuuguaaagugggccguaaguacaaaa ggaaacuuuuuu auuuaa aacaauccga c aaaucuacu ccauaa    acgguu cuuuacu  
gucaa  -uua                               a    -      g                     -                                  -            u      a          a g         a      guua      g       u 

Annotation confidence Low

Genome context

chr3: 12319184-12319535 [-]

Mature mtr-miR2592aq-5p

• Accession: MIMAT0021188
• Description: Medicago truncatula mtr-miR2592aq-5p mature miRNA
• Sequence: 136 - AGGCUGGUUUAGAUGAAGGUA - 156
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592aq-3p

• Accession: MIMAT0055067
• Description: Medicago truncatula mtr-miR2592aq-3p mature miRNA
• Sequence: 317 - AGACAAUUGUUGUAGUUGGAA - 337
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010