miRBase entry: mtr-MIR5222

Stem-loop mtr-MIR5222


Accession
MI0018285
Description
Medicago truncatula mtr-MIR5222 precursor miRNA


Sequence

3548 reads, 34.0 reads per million, 111 experiments
gcucaguccaUUACAGGAGAAGAAUGUAUGGCuuuugaugauaaaagcuugacuaauuugucuggUAGAGUUCACCAUAUAAGUUUuuccuuuauuaauuuguaua
..............((((((((..(((((((.......(((.....(((.(((......))).))).....))))))))))..))))))))...............

Structure
-gcucaguccaUUAC        AA       Cuuuuga   uaaaa   u   ua 
               AGGAGAAG  UGUAUGG       uga     gcu gac  a
               ||||||||  |||||||       |||     ||| |||   
               uccuuUUU  AUAUACC       ACU     Ugg cug  u
auauguuuaauuauu        GA       -------   UGAGA   u   uu 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr6: 10882021-10882126 [+]

Database links

Mature mtr-miR5222-5p

Accession MIMAT0021179
Description Medicago truncatula mtr-miR5222-5p mature miRNA
Sequence 11 - UUACAGGAGAAGAAUGUAUGGC - 32
Evidence experimental
Illumina [1]

Mature mtr-miR5222-3p

Accession MIMAT0055060
Description Medicago truncatula mtr-miR5222-3p mature miRNA
Sequence 66 - UAGAGUUCACCAUAUAAGUUU - 86
Evidence experimental
unknown

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010