miRBase entry: mtr-MIR5221

Stem-loop mtr-MIR5221


Accession
MI0018284
Description
Medicago truncatula mtr-MIR5221 precursor miRNA


Sequence

13320 reads, 137.0 reads per million, 111 experiments
uauaaaccaugucauauuaaUUCAAAUAUCAUCAUCUGCCUgcaauuuagcccuugaaucuaaacugaAGGAGAGAUGGUGUUUUGACUUaauaggaaag
...........((.((((((.((((((((((((.(((.(((.((.(((((.........))))).)).))))))))))))).))))).)))))).))...

Structure
uauaaaccaug  a      U     -       A   G   g  a     ccc 
           uc uauuaa UCAAA UAUCAUC UCU CCU ca uuuag   u
           || |||||| ||||| ||||||| ||| ||| || |||||   u
           ag auaaUU AGUUU GUGGUAG AGA GGA gu aaauc   g
--------gaa  g      C     U       -   -   a  c     uaa 


Annotation confidence High
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Genome context
chr5: 25852862-25852961 [+]

Database links

Mature mtr-miR5221-5p

Accession MIMAT0055059
Description Medicago truncatula mtr-miR5221-5p mature miRNA
Sequence 21 - UUCAAAUAUCAUCAUCUGCCU - 41
Evidence experimental
unknown

Mature mtr-miR5221-3p

Accession MIMAT0021178
Description Medicago truncatula mtr-miR5221-3p mature miRNA
Sequence 69 - AGGAGAGAUGGUGUUUUGACUU - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010