Stem-loop mtr-MIR2592ao

Accession

MI0018277

Description

Medicago truncatula mtr-MIR2592ao precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592ao
(2 sentences)

Sequence

27144 reads, 166.0 reads per million, 111 experiments

gugcuuggcaAAAUGCUUGAGUCCUGUUGUUuucaaguuugaauuuaucucauucaaagguaacacaauuguugugguugaaaugcacauuccaacugcAACAAUUGUCUUACUCUGGAUGGGgcaauucaaacuugccaaucagcaggaccccaauauucgaucagcaucuu
(((((.((...((((.(((.(((((((((....((((((((((((..(((((((((..(((((.((((((((((((((((.(((....))).)))))))))))))))).))))).))))))))).)))))))))))).....)))))))))..)))))))...)))))))...

Structure

---     u  caA    C   -A         -UUuu            ua         aa     c                a   g 
   gugcu gg   AAUG UUG  GUCCUGUUG     caaguuugaauu  ucucauuca  gguaa acaauuguugugguug aau c
   ||||| ||   |||| |||  |||||||||     ||||||||||||  |||||||||  ||||| |||||||||||||||| |||  
   uacga cu   uuau aac  caggacgac     guucaaacuuaa  gGGGUAGGU  UCAUU UGUUAACAAcgucaac uua a
uuc     -  agc    -   cc         uaacc            -c         -C     C                c   c 

Annotation confidence Low

Genome context

chr5: 21742145-21742317 [+]

Mature mtr-miR2592ao-5p

• Accession: MIMAT0021171
• Description: Medicago truncatula mtr-miR2592ao-5p mature miRNA
• Sequence: 11 - AAAUGCUUGAGUCCUGUUGUU - 31
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592ao-3p

• Accession: MIMAT0055052
• Description: Medicago truncatula mtr-miR2592ao-3p mature miRNA
• Sequence: 100 - AACAAUUGUCUUACUCUGGAUGGG - 123
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010