Stem-loop mtr-MIR2592aj

Accession

MI0018272

Description

Medicago truncatula mtr-MIR2592aj precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592aj
(2 sentences)

Sequence

41888 reads, 303.0 reads per million, 111 experiments

caguuggaaugugcauuucaaccacaacaauuguguuaccuuugaaugggauaaauucaaaaaaCAACAGGACUCAAGCAUUUCGccaagcacuucauguuuucccuuugaaaagaauaaauuuuugucaggcuugcuuuagaugaugguauucaagugccaccgaauugagguucaauccuugacacuuaauaccuucaucuaaaccagcauaacaagaauuuaauauuuucaaaggagaaacaugaggcgcuugCGAAAUGCUCGAGUCCUGUUGuucgacaaguuugaauuaccccauucaaaggaagacaauuguuguaguuggaaugcaccuuacccuaa
.....((((.((((((((((((.(((((((((((.((.((((((((((((...((((((((.(((((((((((((.((((((((((.((((.(((((((((((.((((((((((...(((((((((((...(((.(.(((((((((.((((((.(((((.((..((.((((...))))))..)).))))))))))).)))))))))).)))...)))))))))))...)))))))))).))))))))))).)))))))))))))).))))))))))))).......))))))))..)))))))))))))).))))))))))).)))))))))))).)).))....

Structure

caguu  -  u            c           g  a            aua        ------a             A          c    a           c          gaa           cag   u c         u      c     c  cc  a    g 
     gg aa gugcauuucaac acaacaauugu uu ccuuugaauggg   aauucaaa       aaCAACAGGACUC AGCAUUUCGc aagc cuucauguuuu ccuuugaaaa   uaaauuuuugu   gcu g uuuagauga gguauu aagug ca  ga uuga  
     || || |||||||||||| ||||||||||| || ||||||||||||   ||||||||       ||||||||||||| |||||||||| |||| ||||||||||| ||||||||||   |||||||||||   ||| | ||||||||| |||||| ||||| ||  || |||| g
     cc uu cacguaagguug uguuguuaaca aa ggaaacuuaccc   uuaaguuu       uuGUUGUCCUGAG UCGUAAAGCg uucg ggaguacaaag ggaaacuuuu   auuuaagaaca   cga c aaaucuacu ccauaa uucac gu  cu aacu  
-aauc  a  c            a           g  -            -ca        gaacagc             C          -    c           a          aua           aua   c -         u      -     a  uc  -    u 

Annotation confidence High

Genome context

chr6: 1617098-1617442 [+]

Mature mtr-miR2592aj-5p

• Accession: MIMAT0021166
• Description: Medicago truncatula mtr-miR2592aj-5p mature miRNA
• Sequence: 65 - CAACAGGACUCAAGCAUUUCG - 85
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592aj-3p

• Accession: MIMAT0055048
• Description: Medicago truncatula mtr-miR2592aj-3p mature miRNA
• Sequence: 257 - CGAAAUGCUCGAGUCCUGUUG - 277
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010