Stem-loop mtr-MIR2592ah

Accession

MI0018270

Description

Medicago truncatula mtr-MIR2592ah precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592ah
(2 sentences)

Sequence

41598 reads, 301.0 reads per million, 111 experiments

caguuggaaugugcauuccaaccacaacaauuguguuaccuugaaugggauaaauucaaaccugcaaaaCAACAGGACUCAAGCAUUUCGccaagaaccucauguuuucccuuugaaaagaauaaauuuuugugaggcuugcuuuagaugaugguauucaagugccaccgaauugagguucaauccuugacacuuaauaccuucaucuaaaccagcauaacaaaaauuuaauauuuucaaaggagaaacacgagguucuugCGAAAUGCUCGAGUCCUGUUGuuugacaaguuugaauuaccccauucaaagaaagacaauuguuguaguuggaaugcaccuuacccuaa
.....((((.((((((((((((.(((((((((((.((.(.(((((((((...(((((((((.((..((((((((((((((.((((((((((.(((((((((.((((((.((((((((((...(((((((((((...(((.(.(((((((((.((((((.(((((.((..((.((((...))))))..)).))))))))))).)))))))))).)))...)))))))))))...)))))))))).)))))).))))))))))))))))))).))))))))))))))..)).)))))))))..))))))))).).)).))))))))))).)))))))))))).)).))....

Structure

caguu  -  u            c           g  a c         aua         c  ca              A          c         a      c          gaa           gag   u c         u      c     c  cc  a    g 
     gg aa gugcauuccaac acaacaauugu uu c uugaauggg   aauucaaac ug  aaaCAACAGGACUC AGCAUUUCGc aagaaccuc uguuuu ccuuugaaaa   uaaauuuuugu   gcu g uuuagauga gguauu aagug ca  ga uuga  
     || || |||||||||||| ||||||||||| || | |||||||||   ||||||||| ||  |||||||||||||| |||||||||| ||||||||| |||||| ||||||||||   |||||||||||   ||| | ||||||||| |||||| ||||| ||  || |||| g
     cc uu cacguaagguug uguuguuaaca aa g aacuuaccc   uuaaguuug ac  uuuGUUGUCCUGAG UCGUAAAGCg uucuuggag acaaag ggaaacuuuu   auuuaaaaaca   cga c aaaucuacu ccauaa uucac gu  cu aacu  
-aauc  a  c            a           g  a a         -ca         a  ag              C          -         c      a          aua           aua   c -         u      -     a  uc  -    u 

Annotation confidence High

Genome context

chr5: 27900788-27901137 [-]

Mature mtr-miR2592ah-5p

• Accession: MIMAT0021164
• Description: Medicago truncatula mtr-miR2592ah-5p mature miRNA
• Sequence: 70 - CAACAGGACUCAAGCAUUUCG - 90
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592ah-3p

• Accession: MIMAT0055046
• Description: Medicago truncatula mtr-miR2592ah-3p mature miRNA
• Sequence: 262 - CGAAAUGCUCGAGUCCUGUUG - 282
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010