Accession
MI0018268
Description
Medicago truncatula
mtr-MIR2592af precursor miRNA
Literature search
1 open access papers mention mtr-MIR2592af
(2 sentences)
(2 sentences)
Sequence
39657
reads,
320.0
reads per million, 111 experiments
aacuggccaaaCAACAGGACUCAAGCAUUUCGCcccgcguucauguuuuuccuuugaaaagaauaaauuuuuauuaggcuugcuuuagaugaugguauucaagugccaacgaaaugagguucauuccuugacacuuaaUACCUUCAUCUAAACCAGCauaacaagaauuuaaucuuuucaaaggaaaaacaugaacgcugggcgaaaugcuugagucauagccguuuggcaaguu
((((.(((((((.....((((((((((((((((((.((((((((((((((((((((((((((.(((((((((.(((.(((.(.(((((((((.((((((.(((((.(((.(((.(((...)))))).))).))))))))))).)))))))))).))).))).))))))))).)))))))))))))))))))))))))).))))))))))))))))))......))))))).))))
((((.(((((((.....((((((((((((((((((.((((((((((((((((((((((((((.(((((((((.(((.(((.(.(((((((((.((((((.(((((.(((.(((.(((...)))))).))).))))))))))).)))))))))).))).))).))))))))).)))))))))))))))))))))))))).))))))))))))))))))......))))))).))))
Structure
g -AACAG c a a g u c u c c c a g
aacu gccaaaC GACUCAAGCAUUUCGCcc gcguucauguuuuuccuuugaaaaga uaaauuuuu uua gcu g uuuagauga gguauu aagug caa gaa uga
|||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||| | ||||||||| |||||| ||||| ||| ||| ||| g
uuga cgguuug cugaguucguaaagcggg cgcaaguacaaaaaggaaacuuuucu auuuaagaa aau CGA C AAAUCUACU CCAUaa uucac guu cuu acu
a ccgaua u a c a C - U - a c - u
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
chr4: 23356390-23356624 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2592af
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature mtr-miR2592af-5p
| Accession | MIMAT0021162 |
| Description | Medicago truncatula mtr-miR2592af-5p mature miRNA |
| Sequence | 12 - CAACAGGACUCAAGCAUUUCGC - 33 |
| Evidence |
experimental
Illumina [1] |
Mature mtr-miR2592af-3p
| Accession | MIMAT0055045 |
| Description | Medicago truncatula mtr-miR2592af-3p mature miRNA |
| Sequence | 139 - UACCUUCAUCUAAACCAGC - 157 |
| Evidence |
experimental
unknown |
References
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