Accession
MI0018267
Description
Medicago truncatula
mtr-MIR2592ae precursor miRNA
Literature search
1 open access papers mention mtr-MIR2592ae
(2 sentences)
(2 sentences)
Sequence
30470
reads,
247.0
reads per million, 111 experiments
uagucggaaugugcauuccaacuacaacaauugucuuaccuuugaauggguaaauuuaaacaugccaaCAACAGGACUCAAGCAUUUCGucccgcauucaugcuuuuccuuugaaaagaauaaauuuuugguaggcuugcuuuagaugaugauauucaagugccaacgaaacgagguucauuccuugacacuuaauaccuucaucuaaaccagcauaacaagaauuuaaucuuuucaaaggaaaaauaugaacgcuggacgaaaugcucgaguuauggccguuuggcaaguuugaauuaccucauuucagagguaAGACAAUUGUUGUAGUUGGAAugcaccuuacccuaa
.....((((.(((((((((((((((((((((((((((((((((((((((((((.(((((((.(((((((..((.(((((.((((((((((((.((.((((((.((((((((((((((((.((((((((((....(((.(.(((((((((.(.((((.(((((.........(((((......))))).))))))))).).)))))))))).)))....)))))))))).)))))))))))))))).)))))).)).)))))))))))).))))).))...).)))))).)))))))))))).)).)))))))))))))))))))))))))))))))))))).)).))....
.....((((.(((((((((((((((((((((((((((((((((((((((((((.(((((((.(((((((..((.(((((.((((((((((((.((.((((((.((((((((((((((((.((((((((((....(((.(.(((((((((.(.((((.(((((.........(((((......))))).))))))))).).)))))))))).)))....)))))))))).)))))))))))))))).)))))).)).)))))))))))).))))).))...).)))))).)))))))))))).)).)))))))))))))))))))))))))))))))))))).)).))....
Structure
uaguc - u - - a a - -AA G A c a c a guag u c u a c ccaacgaaa uu
gg aa gugcauuccaacuacaacaauugucuuaccuuugaa ug gguaa uuuaaac ugccaa C CA GACUC AGCAUUUCGucc gc uucaug uuuuccuuugaaaaga uaaauuuuug gcu g uuuagauga g uauu aagug cgagg c
|| || |||||||||||||||||||||||||||||||||||| || ||||| ||||||| |||||| | || ||||| |||||||||||| || |||||| |||||||||||||||| |||||||||| ||| | ||||||||| | |||| ||||| |||||
cc uu cacguAAGGUUGAUGUUGUUAACAGAauggagacuu ac ccauu aaguuug acgguu g gu uugag ucguaaagcagg cg aaguau aaaaggaaacuuuucu auuuaagaac cga c aaaucuacu c auaa uucac guucc a
-aauc a c u u - a u ccg a c u c a a aaua c - u c - --------a uu
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
chr3: 36122943-36123293 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2592ae
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature mtr-miR2592ae-5p
| Accession | MIMAT0021161 |
| Description | Medicago truncatula mtr-miR2592ae-5p mature miRNA |
| Sequence | 69 - CAACAGGACUCAAGCAUUUCG - 89 |
| Evidence |
experimental
Illumina [1] |
Mature mtr-miR2592ae-3p
| Accession | MIMAT0055044 |
| Description | Medicago truncatula mtr-miR2592ae-3p mature miRNA |
| Sequence | 316 - AGACAAUUGUUGUAGUUGGAA - 336 |
| Evidence |
experimental
unknown |
References
|
