Stem-loop mtr-MIR2592ad

Accession

MI0018266

Description

Medicago truncatula mtr-MIR2592ad precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592ad
(2 sentences)

Sequence

26790 reads, 208.0 reads per million, 111 experiments

gaugcuuaucagauguuggagucaugccguuuaacaaguuugaauuaccccauucaaaggaaaACAAUUGUUGCAGUUGGAaggugcauucauuccguaccuacuaacgaucuuuuggacguuuauaccgaacguuuguaccuuccaacuacaacaauuguguuaccuuugaaugggguaaauucaaacuggccaaaCAACAGGACUCAAGCAUUUCGCccggcauucau
((((((...((((((((.(((((.((..((((....((((((((((((((((((((((((((.((((((((((.((((((((((((((..(.(((.(((......((((.(((...)))))))..))).))).)..)))))))))))))).)))))))))).)).)))))))))))))).))))))))))....))))..)).))))).))))))).)...))))))...

Structure

---      uau -       g     a  cc    aaca          -              -  a          C              uu a   c   ccuacu    a   u 
   gaugcu   c agauguu gaguc ug  guuu    aguuugaauu accccauucaaagg aa ACAAUUGUUG AGUUGGAaggugca  c uuc gua      aacg ucu  
   ||||||   | ||||||| ||||| ||  ||||    |||||||||| |||||||||||||| || |||||||||| ||||||||||||||  | ||| |||      |||| ||| u
   uuacgg   G UUUACGA CUCAG AC  Caaa    ucaaacuuaa ugggguaaguuucc uu uguuaacaac ucaaccuuccaugu  g aag cau      uugc agg  
uac      ccC C       A     G  AA    ccgg          a              a  g          a              uu c   c   ----au    -   u 

Annotation confidence Low

Genome context

chr3: 26559227-26559456 [-]

Mature mtr-miR2592ad-5p

• Accession: MIMAT0055043
• Description: Medicago truncatula mtr-miR2592ad-5p mature miRNA
• Sequence: 64 - ACAAUUGUUGCAGUUGGA - 81
• Evidence: experimental ; unknown

Mature mtr-miR2592ad-3p

• Accession: MIMAT0021160
• Description: Medicago truncatula mtr-miR2592ad-3p mature miRNA
• Sequence: 198 - CAACAGGACUCAAGCAUUUCGC - 219
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010