Stem-loop mtr-MIR2592ab

Accession

MI0018264

Description

Medicago truncatula mtr-MIR2592ab precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592ab
(2 sentences)

Sequence

34534 reads, 259.0 reads per million, 111 experiments

aauucaaaccugccaaaCAACAGGACUCAAGCAUUUCGCucgacauucauguuuuuccuuugaaaauacuaaauucuuguuagguugguuuagaugaagguauuaagugucaaggaaugaaccucauuucauuggcaauugaauaccauuaucuaaagcacaccuaacaaaaauuuauucuuuucaaaGGAAAACAUGAAUGCCGGGcgaaaugcgugacucauguuguuuggcagguuugaauuu
((((((((((((((((((((((.((.(((.((((((((((((.((((((((((((.((((((((((...((((((.(((((((((((.(((((((((.((((((...(((((((((((((...))))))).))))))....)))))).))))))))).)).))))))))).))))))...)))))))))))))))))))))).)))))))))))).))).)).)))))))))))))))))))))).

Structure

-                      G  C   A            a            u          uac      c         -  g         a      -aag      -       a 
 aauucaaaccugccaaaCAACA GA UCA GCAUUUCGCucg cauucauguuuu ccuuugaaaa   uaaauu uuguuaggu ug uuuagauga gguauu    ugucaa ggaauga  
 |||||||||||||||||||||| || ||| |||||||||||| |||||||||||| ||||||||||   |||||| ||||||||| || ||||||||| ||||||    |||||| ||||||| c
 uuaaguuuggacgguuuguugu cu agu cguaaagcGGGC GUAAGUACAAAA GGaaacuuuu   auuuaa aacaaucca ac aaaucuauu ccauaa    acgguu cuuuacu  
u                      a  c   g            C            -          cuu      a         c  g         a      guua      a       c 

Annotation confidence Low

Genome context

chr1: 28276328-28276573 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592ab

Mature mtr-miR2592ab-5p

• Accession: MIMAT0021158
• Description: Medicago truncatula mtr-miR2592ab-5p mature miRNA
• Sequence: 18 - CAACAGGACUCAAGCAUUUCGC - 39
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592ab-3p

• Accession: MIMAT0055041
• Description: Medicago truncatula mtr-miR2592ab-3p mature miRNA
• Sequence: 189 - GGAAAACAUGAAUGCCGGG - 207
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010