Stem-loop mtr-MIR2592z

Accession

MI0018262

Description

Medicago truncatula mtr-MIR2592z precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592z
(2 sentences)

Sequence

42499 reads, 309.0 reads per million, 111 experiments

caguuggaaugugcauuccaaccacaacaauuguguuaccuuugaaugggauaaauucaaaccugcaaaaCAACAGGACUCAAGCAUUUCGccgagcacuucauguuuucccguugaaaagaauaaauuuuugugaggcuugcuuuagaugaugguauucaagugccacagaauugagguucaauccuugacacuuaauaccuucaucuaaaccagcauaacaagaauuuaauauuuucaaaggagaaacaugaggugcucgCGAAAUGCUCGAGUCCUGUUGuuugacaaguuugaauuaccccauucaaaggaagacaauuguuguaguuggaaugcaccuuacccuaa
.....((((.((((((((((((.(((((((((((.((.((((((((((((...(((((((((.((..((((((((((((((.((((((((((.((((((((((((((((.((.(((((((...(((((((((((...(((.(.(((((((((.((((((.(((((.((.((.(((((...))))).)))).))))))))))).)))))))))).)))...)))))))))))...))))))).)).)))))))))))))))))))))))))).))))))))))))))..)).)))))))))..)))))))))))))).))))))))))).)))))))))))).)).))....

Structure

caguu  -  u            c           g  a            aua         c  ca              A          c                c  g       gaa           gag   u c         u      c     c  c  a     g 
     gg aa gugcauuccaac acaacaauugu uu ccuuugaauggg   aauucaaac ug  aaaCAACAGGACUC AGCAUUUCGc gagcacuucauguuuu cc uugaaaa   uaaauuuuugu   gcu g uuuagauga gguauu aagug ca ag auuga  
     || || |||||||||||| ||||||||||| || ||||||||||||   ||||||||| ||  |||||||||||||| |||||||||| |||||||||||||||| || |||||||   |||||||||||   ||| | ||||||||| |||||| ||||| || || ||||| g
     cc uu cacguaagguug uguuguuaaca aa ggaaacuuaccc   uuaaguuug ac  uuuGUUGUCCUGAG UCGUAAAGCg cucguggaguacaaag gg aacuuuu   auuuaagaaca   cga c aaaucuacu ccauaa uucac gu uc uaacu  
-aauc  a  c            a           g  -            -ca         a  ag              C          -                a  a       aua           aua   c -         u      -     a  -  c     u 

Annotation confidence High

Genome context

chr1: 13998252-13998602 [-]

Mature mtr-miR2592z-5p

• Accession: MIMAT0021156
• Description: Medicago truncatula mtr-miR2592z-5p mature miRNA
• Sequence: 71 - CAACAGGACUCAAGCAUUUCG - 91
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592z-3p

• Accession: MIMAT0055040
• Description: Medicago truncatula mtr-miR2592z-3p mature miRNA
• Sequence: 263 - CGAAAUGCUCGAGUCCUGUUG - 283
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010