Stem-loop mtr-MIR2592w

Accession

MI0018259

Description

Medicago truncatula mtr-MIR2592w precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592w
(2 sentences)

Sequence

58202 reads, 410.0 reads per million, 111 experiments

aaaCAACAGGACUCAAGCAUUUCGcaagcaccucauguuucuccuuugaaaauauuaaauuuuuguuaugcugguuuagaugaagguauuaagugucaaggauugaaccucaauucgguggcacuugaauaccaucaucuaaagcaagccucacaaaaauuuauuauuuucaaagggaaaacaugagguguuuggcgAAAUGCUUGAGUCCUGUUGUU
.(((((((((((((((((((((((((((((((((((((((.(((((((((((((.(((((((((((...((((.(((((((((.((((((((((((((.(((((((...)))))))..))))))))).))))).))))))))).).)))...))))))))))).))))))))))))).))))))))))))))).))))))))))))))))))))))))

Structure

a                        -               c             u           uau   - g         a     -         -a       a 
 aaCAACAGGACUCAAGCAUUUCGc aagcaccucauguuu uccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguau uaaguguca  ggauuga  
 |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||   ||| | ||||||||| ||||| |||||||||  ||||||| c
 UUGUUGUCCUGAGUUCGUAAAgcg uuuguggaguacaaa gggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccaua guucacggu  cuuaacu  
-                        g               a             u           cuc   a g         a     a         gg       c 

Annotation confidence High

Genome context

chr3: 41946066-41946283 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592w

Mature mtr-miR2592w-5p

• Accession: MIMAT0021153
• Description: Medicago truncatula mtr-miR2592w-5p mature miRNA
• Sequence: 4 - CAACAGGACUCAAGCAUUUCG - 24
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592w-3p

• Accession: MIMAT0055037
• Description: Medicago truncatula mtr-miR2592w-3p mature miRNA
• Sequence: 198 - AAAUGCUUGAGUCCUGUUGUU - 218
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010