Stem-loop mtr-MIR2592v

Accession

MI0018258

Description

Medicago truncatula mtr-MIR2592v precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592v
(2 sentences)

Sequence

aaaCAACAGGACUCAAGCAUUUCGCaagcaccucauguuucuccuuugaaaauauuaaauuuuuguuaugcugguuuagaugaagguauuaagugucaaggauugaaccucaauucgguggcacuugaauaccaucaucuaaagcaagccucacaaaaauuuauuauuuucaaagggaaaacaugagguguuuggcgaaaugcuugaguccuguuguu
.(((((((((((((((((((((((((((((((((((((((.(((((((((((((.(((((((((((...((((.(((((((((.((((((((((((((.(((((((...)))))))..))))))))).))))).))))))))).).)))...))))))))))).))))))))))))).))))))))))))))).))))))))))))))))))))))))

Structure

a                        -               c             u           uau   - g         a     -         -a       a 
 aaCAACAGGACUCAAGCAUUUCGC aagcaccucauguuu uccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguau uaaguguca  ggauuga  
 |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||   ||| | ||||||||| ||||| |||||||||  ||||||| c
 uuguuguccugaguucguaaagcg uuuguggaguacaaa gggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccaua guucacggu  cuuaacu  
-                        g               a             u           cuc   a g         a     a         gg       c 

Annotation confidence Low

Genome context

chr2: 14759368-14759585 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592v

Mature mtr-miR2592v

• Accession: MIMAT0021152
• Description: Medicago truncatula mtr-miR2592v mature miRNA
• Sequence: 4 - CAACAGGACUCAAGCAUUUCGC - 25
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010