Accession
MI0018257
Description
Medicago truncatula
mtr-MIR2592u precursor miRNA
Literature search
1 open access papers mention mtr-MIR2592u
(2 sentences)
(2 sentences)
Sequence
57815
reads,
408.0
reads per million, 111 experiments
gucaaaCAACAGGACUCAAGCAUUUCGcaagcaccucauguuucuccuuugaaaauauuaaauuuuuguuaugcugguuuagaugaagguauuaagugucaaggauugaaccucaauucgguggcacuugaauaccaucaucuaaagcaagccucacaaaaauuuauuauuuucaaagggaaaacaugagguguuuggcgAAAUGCUUGAGUCCUGUUGUU
....(((((((((((((((((((((((((((((((((((((((.(((((((((((((.(((((((((((...((((.(((((((((.((((((((((((((.(((((((...)))))))..))))))))).))))).))))))))).).)))...))))))))))).))))))))))))).))))))))))))))).))))))))))))))))))))))))
....(((((((((((((((((((((((((((((((((((((((.(((((((((((((.(((((((((((...((((.(((((((((.((((((((((((((.(((((((...)))))))..))))))))).))))).))))))))).).)))...))))))))))).))))))))))))).))))))))))))))).))))))))))))))))))))))))
Structure
guca - c u uau - g a - -a a
aaCAACAGGACUCAAGCAUUUCGc aagcaccucauguuu uccuuugaaaaua uaaauuuuugu gcu g uuuagauga gguau uaaguguca ggauuga
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||| | ||||||||| ||||| ||||||||| ||||||| c
UUGUUGUCCUGAGUUCGUAAAgcg uuuguggaguacaaa gggaaacuuuuau auuuaaaaaca cga c aaaucuacu ccaua guucacggu cuuaacu
---- g a u cuc a g a a gg c
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chr2: 4195504-4195724 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2592u
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature mtr-miR2592u-5p
| Accession | MIMAT0021151 |
| Description | Medicago truncatula mtr-miR2592u-5p mature miRNA |
| Sequence | 7 - CAACAGGACUCAAGCAUUUCG - 27 |
| Evidence |
experimental
Illumina [1] |
Mature mtr-miR2592u-3p
| Accession | MIMAT0055035 |
| Description | Medicago truncatula mtr-miR2592u-3p mature miRNA |
| Sequence | 201 - AAAUGCUUGAGUCCUGUUGUU - 221 |
| Evidence |
experimental
unknown |
References
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